Current database versions

Database Type	Database Version	Location
Chromosomes	NC_003070.5	NCBI
	NC_003071.3	NCBI
	NC_003074.4	NCBI
	NC_003075.3	NCBI
	NC_003076.4	NCBI
Transcripts	ATH1.cdna - v3	TAIR
Repeat Elements	August 8, 2005	Repbase at GIRI

small RNA library datasets

Library	Description	GEO Accession
Col-0, inf	Col-0, inflorescence tissue (stage 1-12 flowers)	GSM154336
rdr1, inf	rdr1-1, inflorescence tissue (stage 1-12 flowers)	GSM154365
rdr2, inf	rdr2-1, inflorescence tissue (stage 1-12 flowers)	GSM154367
rdr6, inf	rdr6-15, inflorescence tissue (stage 1-12 flowers)	GSM154368
dcl1, inf	dcl1-7, inflorescence tissue (stage 1-12 flowers)	GSM154361
dcl2, inf	dcl2-1, inflorescence tissue (stage 1-12 flowers)	GSM154362
dcl3, inf	dcl3-1, inflorescence tissue (stage 1-12 flowers)	GSM154363
dcl4, inf	dcl4-2, inflorescence tissue (stage 1-12 flowers)	GSM154364
Col-0, sdlg	Col-0, 3 day post-germination seedlings	GSM154375
rdr6, sdlg	rdr6-15, 3 day post-germination seedlings	GSM154376
Col-0, leaf	Col-0, leaf tissue	GSM154370
OSU1 comp	OSU1, composite small RNA sequences	GSM154377
Bartel Col-0 whole flowers	Col-0, 6 weeks post-germination whole flowers	GSM118372
Bartel Col-0 rosette leaves	Col-0, 4 weeks post-germination rosette leaves	GSM118373
Bartel Col-0 whole seedlings	Col-0, 6 days post-germination whole seedlings	GSM118374
Bartel Col-0 whole siliques	Col-0, 2 months post-germination whole siliques	GSM118375

DNA methylation and transcription datasets

Samples	Description	GEO Accession
Col-0, methylation (1)	Col-0, methylation_IP/total_DNA 60930	GSM138296
Col-0, methylation (2)	Col-0, methylation_IP/total_DNA 60935	GSM138297
met1-6 transcripts (1)	met1-6, met1_RNA_expression_A	GSM138298
met1-6 transcripts (2)	met1-6, met1_RNA_expression_B	GSM138299

Gene expression datasets

Samples	GEO Accession
Col-0	GSM47011 GSM47012 GSM47013 GSM47020 GSM47021 GSM47022 GSM47049 GSM47050 GSM47051
Ler	GSM47014 GSM47015 GSM47016 GSM47017 GSM47018 GSM47019
hen1-1	GSM47034 GSM47035 GSM47036
hyl1-2	GSM47040 GSM47041 GSM47042
dcl1-7	GSM47023 GSM47024 GSM47025 GSM47026 GSM47027
dcl2-1	GSM47028 GSM47029 GSM47030
dcl3-1	GSM47031 GSM47032 GSM47033
dcl4-2	GSM65932 GSM65933 GSM65934
rdr1-1	GSM47043 GSM47044 GSM47045
rdr2-1	GSM47046 GSM47047 GSM47048
rdr6-15	GSM47052 GSM47053 GSM47054
hst-15	GSM47037 GSM47038 GSM47039

The ASRP website organizes information about Arabidopsis thaliana small RNAs. It is funded by NSF as a 2010 project. All small RNAs have either been isolated by the ASRP or published by other labs.